Computational biology

Spatial Transcriptomics

Latent-space inference for understanding cellular composition and spatial relationships.
PythonVariational MethodsSingle-cell RNA Sequencing
Latent-space visualization from the spatial transcriptomics project

Project story

In this eight-month capstone project, our team used variational autoencoders and variational graph autoencoders to study relationships between single-cell RNA sequencing data and image-based spatial transcriptomics data.

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